PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000700887
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 188aa    MW: 20872.4 Da    PI: 8.6113
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000700887genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.55.7e-1823622059
                   S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY 20 fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                     rsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  MDP0000700887 23 LCRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 62
                   57*************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182902.35E-142164IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-172364IPR003657WRKY domain
PfamPF031061.3E-122462IPR003657WRKY domain
PROSITE profilePS5081123.0552564IPR003657WRKY domain
SMARTSM007741.5E-102563IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MARLFVNCNS QKIYVVSHRS HVLCRSYYKC TNAGCPVRKH VERASHDPKA VITTYEGKHN  60
HDVPTAKSSS HDTSGPTNVN VPSRIRPEES DTISLDLGVG MTSGGEIRTN EHLQLHSDLV  120
ERXXHTNSNF RFAQNTXVST YYGVLNGGMN QYGSRENPSE SRSMEILPLN HSSYPYPQNM  180
GRVLTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-1825643877Probable WRKY transcription factor 4
2lex_A8e-1825643877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008342208.11e-110PREDICTED: probable WRKY transcription factor 20 isoform X1
RefseqXP_008342210.11e-111PREDICTED: probable WRKY transcription factor 20 isoform X2
SwissprotQ93WV09e-57WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLM5X2W23e-93M5X2W2_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s37260.17e-70(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-58WRKY family protein